D3.js

• D3.js - Data-Driven Documents
• Vega - a visualization grammar; wiki;Gallery
• jsDataV.is; book: http://jsdatav.is/intro.html ; http://jsdatav.is/chap07.html
• Jan Spike: Creating network diagrams with D3.js - ARCS; simple introduction to drawing directed network using D3
• 3D Force Layout
• Web VOWL; Friend of a Friend (FOAF) vocabulary
• graphSub - drawing a neighborhood of selected node
• d3-process-map
• demo - fix nodes / unfix nodes
• Jason Davies: Fast detecting of duplicates; Planarity
• How to Make an Interactive Network Visualization / D3.js
• UK economy
• Integrative Multi-species Prediction
• D3.js: How to handle dynamic JSON Data
• http://datavisualizationsoftwarelab.com/
• http://www.r-bloggers.com/ggplot2-docs-completely-remade-in-d3-js
• Graph Visualization for Neo4j
• Static and dynamic network visualization with R; PDF
• Elijah Meeks and Maya Krishnan: Introduction to Network Analysis and Representation; GitHub
• EUSN'16 workshop PDF
• D3plus: Network (x,y); Simple Static Network
• Hive plots
• Elijah Meeks: Creating effective network data visualization with D3.js / slides

• Grotto - Network Visualization and Data Sharing
• The InfoVis Toolkit
• http://sigmajs.org/
• JSNetworkX - A JavaScript port of the NetworkX graph library; example1

• Directed Graph Editor

• D3's enter() and exit(): Under the Hood
• How to Make an Interactive Network Visualization ! print

• outdated GBD visualization tool
• Dashing: Data Visualization and D3.js

• D3 gallery
• The Big List of D3.js Examples - Christophe Viau
• Over 1000 D3.js Examples and Demos; Over 2000 D3.js Examples and Demos
• Modifying a Force Layout
• Better force layout node selection
• Programming language network
• BLOSUM matrices Amino Acid / chemistry
• Hive Plots
• Les Misérables Co-occurrence - matrix
• Gene ontology data visualization with D3.js and python
• Vélib network visualization - Voronoi decomposition
• D3.js with force direct graph with support for drag and drop to make node fixed
• Force-based label placement
• Directed Graph Editor
• Force Editor + Pan/Zoom
• d3-ForceEdgeBundling on US airline routes graph
• Visualization of passes in a soccer game
• Build Your Own Graph!
• The PopCha! Movie Network
• Static Force Layout
• Force-Directed Graph
• Radial Reingold–Tilford Tree
• How To Convert Ccytoscape Network Format Table Data To Json/Xgmml
• json representation for d3 force directed networks, example
• Programming language network → data
• Language Network
• Linked Jazz –> data? , additional info
• Drew Conway: Visualizing networkx graphs in the-browser using d3, ZIA, Python
• VAX! A game about epidemic prevention
• Molecular viewer
• d3 process map
• WhoDoTheyServe.com - a non-profit opensource effort to map the global political, financial and corporate power structure
• iTunes library network graph
• Layouts; Force Layout
• Graph editor
• Linked Jazz network
• https://github.com/nylen/d3-process-map
• The Music of Graphs - editor, eigenvalues; Planarity - moving, testing
• d3.js force directed graph example (basic), curved links (style)
• networkD3: D3 JavaScript Network Graphs from R
• Stackoverflow: Can't add labels to d3js force layout network visualization
• An A to Z of extra features for the d3 force layout
• d3.js network diagram slider filter
• Network (X;Y)
• Collaborations between research groups and core facilities at the Stowers Institute
• Visualizing my Social Graph with d3.js
• D3.js in Action
• A template for rendering small NodeXL visualisations on the web using the d3.js
• Visualising New York Times Article API Tag Graphs Using d3.js
• Does Force-Directed Layout of d3-js support image as node?
• A Sociology Citation Network; New version
• Method: Data visualization with D3.js and python
• Brushable Network, II, Brushable Network
• Congressional Network Analysis
• Draggable Network, Draggable Network, II
• Visualizing discussions on Reddit with a D3 network and Embedly
• Nodal is a fun way to view your GitHub network graph
• Trisul 5.5 Multi layer streaming network analytics
• Building Cubic Hamiltonian Graphs from LCF Notation
• Collatz Graph: All Numbers Lead to One
• Directed graph renderer for javascript, wiki
• DAG as force graph
• GoJS: Sankey Diagram; Family Tree; Logic Circuit; Dynamic Ports

• http://sauce.joenoodles.com/pltransfers/
• http://rfw.name/blog/2012/10/24/visualizing_facebook_friends.html
• http://blog.stephenboak.com/2012/06/15/d3-flow-vis-tutorial.html

genealogies, kinship

• http://stackoverflow.com/questions/31245751/how-do-you-create-a-family-tree-in-d3-js
• https://github.com/Lucas-C/genealogic-d3
• https://www.reddit.com/r/Genealogy/comments/3ky3su/i_used_d3js_to_draw_fancy_descendant_charts/
• https://github.com/justincy/d3-pedigree-examples
• http://www.nowherenearithaca.com/2015/01/loading-gedcom-files-into-d3js-family.html
• https://codedump.io/share/DruXBQ5wfplD/1/how-do-you-create-a-family-tree-in-d3js
• https://chezsoi.org/lucas/blog/2014/11/18/en-genealogy-tree-visualization-with-d3-js/
• http://www.d3noob.org/2014/01/tree-diagrams-in-d3js_11.html
• https://github.com/bengarvey/lineage
• https://groups.google.com/forum/#!topic/d3-js/swdNaxuD2pk
• http://dataalbum.github.io/
• https://addons.alfresco.com/addons/alfresco-genealogy
• http://www.robschmuecker.com/d3-js-drag-and-drop-zoomable-tree/
• http://blogbob.coret.org/2014/08/geographical-distribution-of.html

• R-Package d3Network; GitHub; examples, adding arrows
• d3js/SVG Export demo
• How do I save/export an SVG file after creating an SVG with D3.js
• Save SVG as an Image
• Save SVG as PNG
• Exporting D3.js graphs to static SVG files, programmatically
• Malcolm Maclean: D3 Tips and Tricks book, Export an image from a d3.js page as a SVG or bitmap
• Save and print a D3 generated SVG
• Exporting SVG graphics to PNG or JPG
• JS fiddle: SVG, Canvas, PNG
• Chrome / SVG crowbar 2
• https://github.com/Causata/svgenie
• D3js click function to save SVG as dataurl in IMG tag, load into CANVAS and save as PNG dataurl, and auto download the actual PNG file
• Render D3.js-driven SVG server-side!
• Creating an SVG file with D3 and Node.js
• Scripting Inkscape with d3.js
• Love generating SVG with javascript? Move it to a server!
• Tulip: Export html containing d3.js animating SVG
• Visualizing a NetworkX graph in the IPython notebook with d3.js
• How do I save/export an SVG file after creating an SVG with D3.js (IE, safari and chrome)?
• PhantomJS and D3.js
• Static or dynamic? d3js and Jekyll with PhantomJS
• Creating static data visualizations with D3.js and Node.js
• The fall and rise of SVG – how SVG is more relevant than ever
• D3js save SVG file
• D3.js tips and tricks / slides
• D3js save SVG file NE DELA; FileSaver.js
• An example of creating a PNG from an SVG in D3
• Exporting D3.js graphs to static SVG files, programmatically
• Exporting - three easy ways to get D3 visualizations out of D3
• Export an image from a d3.js page as a SVG or bitmap
• Using d3.js both on the front end and server for generating images with node.js
• Download a D3 visualization in Chrome
• Combining the power of R and d3.js

Loading JS

• dynamically-load-js-inside-js
• dynamically-load-refresh-and-execute-javascript-from-external-file
• Nonblocking Scripts
• On-Demand JavaScript Explained
• node-js-code-snippet-dynamically-load-all-javascript-in-a-folder
• dynamically-loading-css-and-js-files-using-jquery
• Loader

Parameters

• W3 school - JS input
• enter/exit
• Mortgage vnos podatkov
• variables library
• Local Python Server

Networks

• Building cubic hamiltonian graphs
• How to make an interactive network visualization
• GraphSub
• Webvowl; org; Export !!!!
• Process map
• Visualizing NetworkX graphs in the browser using D3
• Fisheye
• Selectable force directed graph
• D3 Selectable Force-Directed Graph
• Planarity
• Change-point detection in networks
• UK Economy
• Power structure

• https://www.r-bloggers.com/creating-a-network-using-r/
• https://www.r-bloggers.com/an-awesome-list-of-network-analysis-resources/
• https://christophergandrud.github.io/networkD3/
• https://cran.r-project.org/web/packages/networkD3/networkD3.pdf
• https://www.r-bloggers.com/network-visualization-part-6-d3-and-r-networkd3/

• https://www.r-bloggers.com/network-visualization-part-5-cytoscape-an-update-rcy3/
• https://www.r-bloggers.com/network-visualization-part-4-3d-networks/
• https://www.r-bloggers.com/network-visualization-part-3-hive-plots/
• https://www.r-bloggers.com/network-visualization-part-2-gephi/

• https://www.r-bloggers.com/social-network-analysis-using-r-and-gephis/
• https://www.r-bloggers.com/sunbelt-and-eusn-workshops-on-using-r-and-igraph-for-sna/
• https://www.r-bloggers.com/network-visualization-with-plotly-and-shiny/

• https://www.r-bloggers.com/multivariate-data-analysis-and-visualization-through-network-mapping/
• https://www.r-bloggers.com/basic-ggplot2-network-graphs-ver2/
• https://www.r-bloggers.com/visualizing-with-d3-javascript-network-graphs-from-r/
• https://www.r-bloggers.com/predictability-in-network-models/
• https://www.r-bloggers.com/data-journalism-awards-data-visualization-of-the-year-2016/
• http://blog.revolutionanalytics.com/2016/04/the-fbis-aerial-surveillance-program-visualized-with-r.html
• http://buzzfeednews.github.io/2016-04-federal-surveillance-planes/analysis.html
• https://www.r-bloggers.com/push-it-to-the-limit-som-clustering-networks/
• https://www.r-bloggers.com/ggnetwork-network-geometries-for-ggplot2/

• https://www.r-bloggers.com/analyzing-golden-state-warriors-passing-network-using-graphframes-in-spark/
• https://github.com/yukiegosapporo/gsw_passing_network

Trees

• http://bl.ocks.org/mbostock/2966094 geneo
• https://www.jasondavies.com/tree-of-life/

Don't forget

• http://www.ezglot.com/words.php?l=eng&w=color
• https://www.jasondavies.com/coffee-wheel/ barve
• https://www.jasondavies.com/crayola/
• https://www.jasondavies.com/hilbert-curve/
• https://www.jasondavies.com/wordcloud/#http%3A%2F%2Fsearch.twitter.com%2Fsearch.json%3Frpp%3D100%26q%3D%7Bword%7D=cloud
• https://www.jasondavies.com/maps/random-points/
• https://github.com/jasondavies/d3-cloud
• http://www.primordion.com/Xholon/gwt/XholonCirclePacking.html Icon font
• https://icomoon.io/
• https://github.com/gajus/interdependent-interactive-histograms histogram - Ianus
• http://vis.stanford.edu/jheer/d3/pyramid/shift.html
• http://transfers.torlaune.de/
• http://jeromecukier.net/projects/agot/events.html temporal
• http://amp.pharm.mssm.edu/clustergrammer/

• https://github.com/ignacioola/insights
• http://charts.animateddata.co.uk/tatum/ !!! podatki
• http://bl.ocks.org/lafarer/7d8ecbf7b06b2ef0f72b
• http://www.stowers.org/stowersreport/maps
• http://www.webreference.com/programming/javascript/rg29/index.html
• http://bl.ocks.org/thedod/4589092
• http://bl.ocks.org/mbostock/1044242
• http://bl.ocks.org/billierinaldi/raw/3779574/
• http://www.redotheweb.com/DependencyWheel/
• http://rjbaxley.com/pubs.html#0
• http://bl.ocks.org/tchaymore/1249394
• http://bl.ocks.org/paulovn/9686202
• http://vax.herokuapp.com/
• http://charts.animateddata.co.uk/f1/
• http://www.stowers.org/stowersreport/maps
• http://vizuly.io/product/mobile-app/?demo=d3js
• http://students.mimuw.edu.pl/%7Erk292662/vertex/
• http://names.darkgreener.com/
• https://annalyzin.wordpress.com/2015/06/01/you-are-who-you-like/
• http://ramblings.mcpher.com/Home/excelquirks/drivesdk/vizdependencies
• http://labs.im/hnstat/
• http://n79.org/infographics/asg1/
• http://bl.ocks.org/mbostock/3885304
• http://bl.ocks.org/NPashaP/f1e73faef87bee899b47
• http://bl.ocks.org/4ndr01d3/2686646672a92aa89a0e